That was my first thought Chris, but AFAIK the vacuum switching is entirely mechanical behind the controls.
Fan on or off and speed doesn't effect the vacuum and where it's routed.
According to the picture from the EVTM the kicker operates in all positions except vent and floor.
Maybe I misinterpreted the OP, and this jump in idle happens when they shift from vent to heat, or panel to defrost?
If that's the case it could well be a cracked/broken line or a damper motor with a blown diaphragm.
Edit: does the idle kick up if you have it set in 'floor' or 'vent'?
Jim,
Lil'Red is a '87 F250 HD, 4.10's, 1356 4x4, Zf-5, 3G, PMGR, Saginaw PS, desmogged with a Holley 80508 and Performer intake.
Too much other stuff to mention.