From what I remember from the original Muscle Parts catalog, the later intake would work on the early heads (improved head for 289/302 was to use the 351 head as this was a 1969 catalog) difference was 4 more manifold bolts on the 69-74 heads, anything that covered those would work, but using an early manifold with bolt holes there would result in a massive water leak.
A thought, if everything except the extra holes fits, tap and plug the holes.
Bill AKA "LOBO"
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Darth Vader 1986 F350 460 converted to MAF/SEFI, E4OD 12X3 1/2 rear brakes, traction loc 3:55 gear, 160 amp 3G alternator
Wife's 2011 Flex Limited
Daily Driver 2009 Flex Limited with factory tow package
Project car 1986 Chrysler LeBaron convertible 2.2L Turbo II, modified A413